KINtaro Database
FAMILY: WaaY (PKLF000041)
Description
The waaY, waaQ, and waaP are located in the central operon of the waa locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. This family consists of several bacterial lipopolysaccharide (kinase) core biosynthesis proteins (WaaY or RfaY ) [PMID: 26100635].
Origin
phmmer: 0.0001;
database: nr;
sequence_cutoff: 100aa;
clustering: cdhit: 90%;
catalytic residues (predicted only): based on - collapsed family logo, 3D structure model, FATCAT structural pairwise alignment with 1ATP, 1O6Y and 6PWD
HMM Model
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Sequences
Aligned domain sequences
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Unaligned domain sequences
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Full sequences
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Description
The waaY, waaQ, and waaP are located in the central operon of the waa locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. This family consists of several bacterial lipopolysaccharide (kinase) core biosynthesis proteins (WaaY or RfaY ) [PMID: 26100635].
Origin
phmmer: 0.0001; database: nr; sequence_cutoff: 100aa; clustering: cdhit: 90%; catalytic residues (predicted only): based on - collapsed family logo, 3D structure model, FATCAT structural pairwise alignment with 1ATP, 1O6Y and 6PWD
HMM Model
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